Add All Folders

Galaxy/galaxy/tools/radiuma/run_preprocessing.py

@@ -0,0 +1,19 @@
+from pysera.preprocessing import Preprocessor
+import argparse
+import pandas as pd
+
+parser = argparse.ArgumentParser()
+parser.add_argument("--input", required=True)
+parser.add_argument("--method", choices=["resample", "shuffle"], required=True)
+parser.add_argument("--output", required=True)
+args = parser.parse_args()
+
+df = pd.read_csv(args.input)
+prep = Preprocessor(df)
+
+if args.method == "resample":
+    result = prep.resample()
+elif args.method == "shuffle":
+    result = prep.shuffle()
+
+result.to_csv(args.output, index=False)