soorena62
29 lines
857 B
YAML
29 lines
857 B
YAML
radiomics_batch_job:
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ops:
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enumerate_cases_auto:
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config:
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images_dir: "C:/Users/Omen16/Documents/Radiuma_Mini/data/images"
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masks_dir: "C:/Users/Omen16/Documents/Radiuma_Mini/data/masks"
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image_exts: [".nii.gz"]
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mask_exts: [".nii.gz"]
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mask_suffixes: ["_mask.nii.gz"]
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allow_fuzzy_match: true
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fuzzy_max_distance: 5
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verbose: true
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radiomics_job:
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ops:
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read_image_and_mask:
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config:
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image_path: "C:/Users/Omen16/Documents/Radiuma_Mini/data/images/CT_AVM.nii.gz"
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mask_path: "C:/Users/Omen16/Documents/Radiuma_Mini/data/masks/CT_AVM_mask.nii.gz"
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filter_image:
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config:
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sigma: 2.0
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extract_features:
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config: {}
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write_outputs:
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config:
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image_out: "dagster_out_single.nii.gz"
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features_out: "dagster_feats_single.csv"
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